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B. Sc. Biochemistry & Molecular Biology
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#structure
Explain why structural alignment is the “ground truth” for a sequence alignment.
[
BIOC 4010
]
Explain why the quality of a simulation is more dependent on the speed of a calculation rather than its accuracy.
[
BIOC 4010
]
Identify and distinguish intervening sequences (group I introns, group II introns, twintrons, split intron, inteins), using key structural and mechanistic features.
[
BIOC 4403
]
Recognize the structures and functions of glycerolipids.
[
BIOC 3300
]
Describe the physical and chemical structure of the human genome, and provide examples of technologies currently used to elucidate and manipulate its content.
[
BIOC 1040
]
Identify general features of the common classes of biomolecules: carbohydrates, lipids, nucleotides and amino acids.
[
multiple courses
]
Describe and interrelate the hierarchical levels of protein structure (1˚ to 4˚) and provide examples of how this structure relates to the function (or dysfunction) of various classes of proteins.
[
multiple courses
]
Describe the structural features of nucleic acids and be able to distinguish them; describe the basis for information content in a DNA sequence; describe the flow of genetic information and be aware of different discoveries emerging in this area.
[
BIOC 2300
]
Draw the structure of a peptide with defined stereochemistry at a given pH.
[
BIOC 3700
]
Analyze implications of molecular spectroscopy (absorption, emission, CD, NMR) results on polypeptide structure and environment in direct context of the physical basis of the technique in question.
[
BIOC 3700
]
Describe the structural features of monosaccharides and be able to depict them; describe the linkages that join monosaccharides to form larger molecules; identify some of the main polysaccharides that occur in nature.
[
BIOC 2300
]
Design a protein engineering experiment to answer questions about structure/function relationships in new protein.
[
BIOC 4700
]
Explain why ab initio protein folding, or the prediction of tertiary structure from a sequence, is considered one of the most challenging problems in computational biology.
[
BIOC 4010
]
Apply peptide bond properties and hydrogen-bonding to predict primary and secondary structuring preferences.
[
BIOC 3700
]
Assign two-dimensional homonuclear and heteronuclear NMR data for a polypeptide and apply these assignments for structure determination.
[
BIOC 4702
]
Explain regulation by mRNA structure and stability.
[
BIOC 4404
]
Explain the problems related to the parametrization of Force Fields.
[
BIOC 4010
]
Apply the principles underlying structure and folding of simple soluble proteins to the more complex physical environment in which membrane proteins operate.
[
BIOC 4700
]
Distinguish Force Field and statistical mechanics energies.
[
BIOC 4010
]
Distinguish the differences in DNA packaging/chromatin organization between prokaryotes and eukaryotes.
[
BIOC 3400
]
Explain the contribution of DNA packaging/chromatin to gene expression and regulation.
[
BIOC 3400
]
Identify techniques to study DNA packaging/chromatin (eg CHIP, DNA sensitivity).
[
BIOC 3400
]
Understand chromatin remodelling.
[
BIOC 4305
]
Describe the challenges and opportunities for gene regulation offered by chromatin structure.
[
BIOC 4404
]
Distinguish among various mechanisms for the modulation of chromatin effects.
[
BIOC 4404
]
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